LOICA
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Index
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A
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B
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C
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D
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E
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F
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G
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H
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I
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K
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L
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M
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N
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O
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R
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S
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T
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U
_
__str__() (GeneProduct method)
,
[1]
(Hill1 method)
,
[1]
,
[2]
,
[3]
(Hill2 method)
,
[1]
,
[2]
,
[3]
(Operator method)
,
[1]
,
[2]
,
[3]
,
[4]
,
[5]
,
[6]
,
[7]
,
[8]
(Receiver method)
,
[1]
,
[2]
,
[3]
,
[4]
,
[5]
(Source method)
,
[1]
,
[2]
,
[3]
,
[4]
,
[5]
,
[6]
(Sum method)
,
[1]
,
[2]
(Supplement method)
,
[1]
,
[2]
A
add_operator() (GeneticNetwork method)
,
[1]
add_regulator() (GeneticNetwork method)
,
[1]
add_reporter() (GeneticNetwork method)
,
[1]
Assay (class in loica)
(class in loica.assay)
B
biomass() (DataMetabolism method)
,
[1]
C
characterize() (Hill1 method)
,
[1]
,
[2]
,
[3]
(Hill2 method)
,
[1]
,
[2]
,
[3]
(Receiver method)
,
[1]
,
[2]
,
[3]
,
[4]
,
[5]
(Source method)
,
[1]
,
[2]
,
[3]
,
[4]
,
[5]
,
[6]
characterize_growth() (in module loica)
(in module loica.util)
Colony (class in loica)
(class in loica.colony)
color (Sum attribute)
,
[1]
,
[2]
D
DataMetabolism (class in loica)
(class in loica.metabolism)
draw() (GeneticNetwork method)
,
[1]
E
express() (GeneProduct method)
,
[1]
expression_rate() (Hill1 method)
,
[1]
,
[2]
,
[3]
(Hill2 method)
,
[1]
,
[2]
,
[3]
(Receiver method)
,
[1]
,
[2]
,
[3]
,
[4]
,
[5]
(Source method)
,
[1]
,
[2]
,
[3]
,
[4]
,
[5]
,
[6]
(Sum method)
,
[1]
,
[2]
F
forward_model() (Hill1 method)
,
[1]
,
[2]
,
[3]
(Hill2 method)
,
[1]
,
[2]
,
[3]
(Receiver method)
,
[1]
,
[2]
,
[3]
,
[4]
,
[5]
(Source method)
,
[1]
,
[2]
,
[3]
,
[4]
,
[5]
,
[6]
forward_model_growth() (in module loica)
(in module loica.util)
fun() (Colony method)
,
[1]
G
GeneProduct (class in loica)
(class in loica.geneproduct)
GeneticNetwork (class in loica)
(class in loica.genetic_network)
gompertz() (in module loica)
(in module loica.metabolism)
gompertz_growth_rate() (in module loica)
(in module loica.metabolism)
growth_rate() (DataMetabolism method)
,
[1]
H
Hill1 (class in loica)
,
[1]
(class in loica.operators)
(class in loica.operators.hill1)
Hill2 (class in loica)
,
[1]
(class in loica.operators)
(class in loica.operators.hill2)
I
initialize() (GeneProduct method)
,
[1]
(GeneticNetwork method)
,
[1]
(Sample method)
,
[1]
K
kymograph() (Colony method)
,
[1]
L
load_loica() (in module loica)
(in module loica.util)
loica
module
loica.assay
module
loica.colony
module
loica.geneproduct
module
loica.genetic_network
module
loica.metabolism
module
loica.operators
module
loica.operators.hill1
module
loica.operators.hill2
module
loica.operators.operator
module
loica.operators.receiver
module
loica.operators.source
module
loica.operators.sum
module
loica.sample
module
loica.supplement
module
loica.util
module
M
map_kymo() (Colony method)
,
[1]
Metabolism (class in loica)
(class in loica.metabolism)
module
loica
loica.assay
loica.colony
loica.geneproduct
loica.genetic_network
loica.metabolism
loica.operators
loica.operators.hill1
loica.operators.hill2
loica.operators.operator
loica.operators.receiver
loica.operators.source
loica.operators.sum
loica.sample
loica.supplement
loica.util
N
norm_kymo() (Colony method)
,
[1]
O
Operator (class in loica)
,
[1]
(class in loica.operators)
,
[1]
,
[2]
,
[3]
,
[4]
,
[5]
(class in loica.operators.operator)
R
ramp_biomass() (in module loica)
(in module loica.metabolism)
ramp_growth_rate() (in module loica)
(in module loica.metabolism)
Receiver (class in loica)
,
[1]
(class in loica.operators)
,
[1]
,
[2]
(class in loica.operators.receiver)
Regulator (class in loica)
,
[1]
(class in loica.geneproduct)
Reporter (class in loica)
,
[1]
(class in loica.geneproduct)
residuals() (Hill1 method)
,
[1]
,
[2]
,
[3]
(Hill2 method)
,
[1]
,
[2]
,
[3]
(Receiver method)
,
[1]
,
[2]
,
[3]
,
[4]
,
[5]
(Source method)
,
[1]
,
[2]
,
[3]
,
[4]
,
[5]
,
[6]
residuals_growth() (in module loica)
(in module loica.util)
run() (Assay method)
,
[1]
S
Sample (class in loica)
(class in loica.sample)
save_loica() (in module loica)
(in module loica.util)
set_regulator() (Sample method)
,
[1]
set_reporter() (Sample method)
,
[1]
set_supplement() (Sample method)
,
[1]
shape (GeneProduct attribute)
,
[1]
(Sum attribute)
,
[1]
,
[2]
SimulatedMetabolism (class in loica)
(class in loica.metabolism)
Source (class in loica)
,
[1]
(class in loica.operators)
,
[1]
,
[2]
,
[3]
(class in loica.operators.source)
step() (GeneProduct method)
,
[1]
(GeneticNetwork method)
,
[1]
(Sample method)
,
[1]
step_biomass() (in module loica)
(in module loica.metabolism)
step_growth_rate() (in module loica)
(in module loica.metabolism)
step_stochastic() (GeneticNetwork method)
,
[1]
substep_stochastic() (GeneticNetwork method)
,
[1]
Sum (class in loica)
(class in loica.operators)
(class in loica.operators.sum)
Supplement (class in loica)
,
[1]
(class in loica.supplement)
T
to_contracted_graph() (GeneticNetwork method)
,
[1]
to_graph() (GeneticNetwork method)
,
[1]
to_sbol() (GeneticNetwork method)
,
[1]
U
upload() (Assay method)
,
[1]
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