loica.assay¶
Module Contents¶
Classes¶
Assay measures a set of samples in parallel at a set of timepoints. |
- class Assay(samples, n_measurements, interval, name='Loica assay', description='', biomass_signal_id=None)¶
Assay measures a set of samples in parallel at a set of timepoints. Connects to flapjack to generate data, and to fit parameters to data.
…
- samplesList[Sample]
List of Samples that belongs to the Assay
- n_measurementsint
Number of measurements to take
- intervalint
Time in hours between each measurements
- namestr
Name of the Assay
- description: str
Descriptioin of the Assay
- biomass_signal_idint
Flapjack ID of the Assay that is associated with the Assay
- run(substeps=10, nsr=0, biomass_bg=0, fluo_bg=0)
Runs the Assay time series
- upload(flapjack, study)
Upload the data produced by running the Assay to Flapjack into the Study
Assay measures a set of samples in parallel at a set of timepoints Connects to flapjack to generate data, and to fit parameters to data
- run(self, substeps=10, nsr=0, biomass_bg=0, fluo_bg=0, stochastic=False)¶
Run the assay measuring at specified time points, with simulation time step dt
- upload(self, flapjack, study)¶