loica.sample¶
Module Contents¶
Classes¶
Representation of a sample that encapsulates GeneticNetwork and Metabolism. |
- class Sample(genetic_network=None, metabolism=None, assay=None, media=None, strain=None)¶
Representation of a sample that encapsulates GeneticNetwork and Metabolism. Incorporate environment information such as Supplements or chemicals, strain and media. Ex: 1 well in a plate, single cell. …
- genetic_networkGeneticNetwork
genetic network that is part of the sample
- metabolismMetabolism
metabolism that drives the genetic network in the sample
- assayAssay
assay to which this sample belongs
- mediastr
Name of the media in the sample
- strainstr
Name of the strain in the sample
Methods
- add_supplement(supplement, concentration)
stablishes the concentration of Supplement
- initialize(self)¶
- set_regulator(self, name, concentration)¶
- set_reporter(self, name, concentration)¶
- set_supplement(self, supplement, concentration, profile=None)¶
- step(self, t, dt, stochastic=False)¶